markeR: An R Toolkit for Evaluating Gene Signatures as Phenotypic Markers
Source:R/markeR-package.R
markeR.RdThe markeR package provides tools for evaluating gene signatures across phenotypes in transcriptomics datasets (especially bulk RNA-seq). It implements scoring and enrichment approaches, alongside intuitive visualizations and performance metrics.
Key features:
Score-based signature quantification (e.g., median-centered, ssGSEA, ranking)
Enrichment analysis using GSEA
Visualization of gene expression, scores, and enrichment results
See also
For more information on using the markeR package, check out the markeR Documentation. You can also visit the GitHub Repository for the latest updates and source code.